COVID, Vol. 3, Pages 1336-1355: Enhancing Feature Selection Optimization for COVID-19 Microarray Data

COVID, Vol. 3, Pages 1336-1355: Enhancing Feature Selection Optimization for COVID-19 Microarray Data

COVID doi: 10.3390/covid3090093

Authors: Gayani Krishanthi Harshanie Jayetileke Jinran Wu Chanjuan Liu You-Gan Wang

The utilization of gene selection techniques is crucial when dealing with extensive datasets containing limited cases and numerous genes, as they enhance the learning processes and improve overall outcomes. In this research, we introduce a hybrid method that combines the binary reptile search algorithm (BRSA) with the LASSO regression method to effectively filter and reduce the dimensionality of a gene expression dataset. Our primary objective was to pinpoint genes associated with COVID-19 by examining the GSE149273 dataset, which focuses on respiratory viral (RV) infections in individuals with asthma. This dataset suggested a potential increase in ACE2 expression, a critical receptor for the SARS-CoV-2 virus, along with the activation of cytokine pathways linked to COVID-19. Our proposed BRSA method successfully identified six significant genes, including ACE2, IFIT5, and TRIM14, that are closely related to COVID-19, achieving an impressive maximum classification accuracy of 87.22%. By conducting a comparative analysis against four existing binary feature selection algorithms, we demonstrated the effectiveness of our hybrid approach in reducing the dimensionality of features, while maintaining a high classification accuracy. As a result, our hybrid approach shows great promise for identifying COVID-19-related genes and could be an invaluable tool for other studies dealing with very large gene expression datasets.