Genes, Vol. 14, Pages 921: Deep-Learning-Based Hepatic Ploidy Quantification Using H&E Histopathology Images

Genes, Vol. 14, Pages 921: Deep-Learning-Based Hepatic Ploidy Quantification Using H&E Histopathology Images

Genes doi: 10.3390/genes14040921

Authors: Zhuoyu Wen Yu-Hsuan Lin Shidan Wang Naoto Fujiwara Ruichen Rong Kevin W. Jin Donghan M. Yang Bo Yao Shengjie Yang Tao Wang Yang Xie Yujin Hoshida Hao Zhu Guanghua Xiao

Polyploidy, the duplication of the entire genome within a single cell, is a significant characteristic of cells in many tissues, including the liver. The quantification of hepatic ploidy typically relies on flow cytometry and immunofluorescence (IF) imaging, which are not widely available in clinical settings due to high financial and time costs. To improve accessibility for clinical samples, we developed a computational algorithm to quantify hepatic ploidy using hematoxylin-eosin (H&E) histopathology images, which are commonly obtained during routine clinical practice. Our algorithm uses a deep learning model to first segment and classify different types of cell nuclei in H&E images. It then determines cellular ploidy based on the relative distance between identified hepatocyte nuclei and determines nuclear ploidy using a fitted Gaussian mixture model. The algorithm can establish the total number of hepatocytes and their detailed ploidy information in a region of interest (ROI) on H&E images. This is the first successful attempt to automate ploidy analysis on H&E images. Our algorithm is expected to serve as an important tool for studying the role of polyploidy in human liver disease.